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ATSPB 2025 Tulln
by Wolfram Weckwerth March 18, 2025

March 18, 2025

Dear all, please find enclosed the announcement for the ATSPB 2025 in Tulln https://boku.ac.at/oekb/bota/atspb-2025 . Please, send abstracts for talks and posters. 😊 Deadline is end of March but just in case contact me if you need more time. Looking forward to meeting you all there. Liebe Grüße Wolfram -- Univ.-Prof. Dr. Wolfram Weckwerth<https://mosys.univie.ac.at/team/wolfram-weckwerth/> Google Scholar<https://scholar.google.com/citations?user=20oOZCgAAAAJ&hl=en> Vice-Head Department Functional & Evolutionary Ecology<https://ecology.univie.ac.at/> Head of Molecular Systems Biology lab<https://mosys.univie.ac.at/> (MOSYS) Director of the Vienna Metabolomics Center<http://metabolomics.univie.ac.at/vime-home/> (VIME) MENTOR – PHD Program Climate Change and plant resilience<https://mentor.univie.ac.at/> Ethics in science and society: http://ptb.univie.ac.at/ Rudolphina podcast podcast mit systembiologen wolfram weckwerth (univie.ac.at)<https://rudolphina.univie.ac.at/podcast-mit-systembiologen-wolfram-weckwerth> Bertalanffy center for the study of systems science<https://www.bcsss.org/de/> Open Science Lebenswissenschaften im Dialog<https://www.openscience.or.at/de/> Environment and climate Research Hub Universität Wien<https://ech.univie.ac.at/> Health in Society Research Hub Universität Wien<https://health.univie.ac.at/ueber/> President of the Austrian Society of Plant Biology ATSPB<https://atspb.univie.ac.at/en/> University of Vienna Djerassiplatz 1 1030 Vienna Austria email: wolfram.weckwerth(a)univie.ac.at<mailto:wolfram.weckwerth@univie.ac.at> mobil: + 43- (0)- 664-60277 76550 fon: + 43-1-4277-76550 NEW PAPER A NEW CHECKPOINT OF TUMOUR ASSOCIATED MACROPHAGES<https://www.nature.com/articles/s41423-024-01134-0> NEW PAPER PANOMICS MEETS BNI<https://www.cell.com/trends/plant-science/fulltext/S1360-1385(22)00222-9?rs…> NEW PAPER TISSUE-SPECIFIC WHEAT GRAIN FILLING<https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.15410> NEW PAPER BIOLOGICAL NITRIFICATION INHIBITION UNDER DROUGHT STRESS<https://link.springer.com/article/10.1007/s00374-021-01578-w> NEW PAPER DISSECTION OF LEAF NODULE METABOLISM<https://www.frontiersin.org/articles/10.3389/fmolb.2021.683671/full> NEW PAPER PANOMICS MEETS GERMPLASM<https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.13372> NEW PAPER MULTIOMICS AND MODELLING IN MOLECULAR MEDICINE<https://www.cell.com/cell-reports/fulltext/S2211-1247(20)30020-6?_returnURL…> NEW PAPER TOWARD A UNIFICATION OF SYSTEM-THEORETICAL PRINCIPLES IN BIOLOGY AND ECOLOGY<https://www.frontiersin.org/articles/10.3389/fams.2019.00029/full> JOURNAL: FRONTIERS METABOLOMICS<http://www.frontiersin.org/Metabolomics> BOOKS: METABOLOMICS – METHODS AND PROTOCOLS<http://www.springerprotocols.com/BookToc/doi/10.1007/978-1-59745-244-1> METABOLOMICS IN PRACTICE<http://eu.wiley.com/WileyCDA/WileyTitle/productCd-3527330895.html> THE HANDBOOK OF PLANT METABOLOMICS<http://eu.wiley.com/WileyCDA/WileyTitle/productCd-3527327770.html> ARTICLES: METABOLOMICS IN SYSTEMS BIOLOGY<http://www.ncbi.nlm.nih.gov/pubmed/14503007> UNPREDICTABILITY OF METABOLISM FROM GENOME SEQUENCES<http://link.springer.com/article/10.1007%2Fs00216-011-4948-9> GREEN SYSTEMS BIOLOGY<http://www.sciencedirect.com/science/article/pii/S1874391911003290> TOWARD A UNIFICATION OF SYSTEM_THEORETICAL PRINCIPLES IN BIOLOGY AND ECOLOGY<https://www.frontiersin.org/articles/10.3389/fams.2019.00029/full>

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Wtrlt: Antw: RE: talk announcement
by Katarzyna Retzer Feb. 3, 2025

Feb. 3, 2025

thank you, 24.02, sorry for the Typo, I attached the word file corrected too, cheers Kati thank you, 24.02, sorry for the Typo, I attached the word file corrected too, cheers Kati >>> Trognitz Friederike <Friederike.Trognitz(a)ait.ac.at> 03.02.2025 10:00 >>> hello the data is already over, 2. February best Friederike Sent with BlackBerry Work (www.blackberry.com) From: Katarzyna Retzer <katarzyna.retzer(a)boku.ac.at> Date: Monday, 03. Feb 2025 at 9:40 AM To: appn(a)lists.vbcf.ac.at <appn(a)lists.vbcf.ac.at> Subject: [APPN] talk announcement Hello, I would like to announce a guest talk at BOKU university, our guest will introduce a novel root quantification method from soil samples (obtained from pot or fieldexperiments), Professor Henrik Brinch-Pedersen (Aarhus University, Department Hello, I would like to announce a guest talk at BOKU university, our guest will introduce a novel root quantification method from soil samples (obtained from pot or fieldexperiments), Professor Henrik Brinch-Pedersen (Aarhus University, Department of Agroecology - Crop Genetics and Biotechnology) Digital PCR aided direct root biomass determination and species profiling in soil samples 2. February 2025 at 10:00 Institute of Forest Ecology (IFE) seminar room: 02/10 Wilhelm-Exner-Haus Peter-Jordan-Straße 82 1190 Wien could you please annonce the talk on the APPN platform, thank you very much Kati Retzer Dr. Katarzyna Retzer Universität für Bodenkultur Institut für Waldökologie Peter Jordanstrasse 82 A-1190 Wien 00436763724837 >>> Katarzyna Retzer 16.11.2024 17:46 >>> Hi ich schicke die Einladung an dich, ich denke es sollte so passen glg Kati >>> "Jez,Jakub" <jakub.jez(a)vbcf.ac.at> 15.11.2024 16:16 >>> Hallo Kathi; Im speziellen weiß ich von der Stefanie Wienkoopstefanie.wienkoop(a)univie.ac.at Wenn an das APPN dann bitte Deine Einladung an mich oder direkt ans APPN schicken: APPN communityappn(a)lists.vbcf.ac.at LG, Jakub. From:Katarzyna Retzer <katarzyna.retzer(a)boku.ac.at> Date: Wednesday, 13. November 2024 at 16:35 To: Jez,Jakub <jakub.jez(a)vbcf.ac.at> Subject: Re: [EXT] Besuch auf der <boku 28 November: Markéta Pernisová Lieber Jakub, vielen Dank, ja das klingt gut, die Einladung kann sehr gerne weiter ausgeschickt werden, vll können die interessierten Leute kurz eine email an mich schreiben, damit ich wenn nötig einen größeren Raum organisiere, glg Kati >>> "Jez,Jakub" <jakub.jez(a)vbcf.ac.at> 11/13/2024, 11:24 AM >>> Hi Kathi, danke, dass Du an uns/APPN gedacht hast. Ist das, was kleines/privates oder könnte die Einladung auch die gesamte APPN community ausgeschickt werden? Ich weiß, dass am UBB und am GMI einige an root phenotyping interessiert sind und auch andere APPN member. LG, Jakub. From:Katarzyna Retzer <katarzyna.retzer(a)boku.ac.at> Date: Tuesday, 12. November 2024 at 20:46 To: Jez,Jakub <jakub.jez(a)vbcf.ac.at> Subject: [EXT] Besuch auf der <boku 28 November: Markéta Pernisová Lieber Jakub, ich hoffe es geht dir gut, am 28.11, um 11:00 wird die Marketa auf der Boku (Institut für Waldökologie, ExnerHaus, Peter-JordanStraße 82, 2ter Stock) einen Vortrag geben über Ihre Erfahrungen mit der Automatisierung von Wurzel- (aber nicht nur) Phänotypisierung wir haben uns überlegt ob du oder jemand von deinem Team vorbeikommen wollt, zum Austausch und Networking, glg Kati Dr. Katarzyna Retzer Universität für Bodenkultur Institut für Waldökologie Peter Jordanstrasse 82 A-1190 Wien 00436763724837 >>> "Jez,Jakub" <jakub.jez(a)vbcf.ac.at> 09/04/2024, 02:27 PM >>> Dear all, We just launched the first version of theAPPN phenotyping resources list, highlighting Austrian plant phenotyping related research infrastructures, instruments, hand-held devices and (software) tools. The goal is to establish a one-stop-shop for plant phenotyping, allowing efficient expertise/RI search and to facilitate and streamline collaborations within and beyond the APPN. In case any instrument is missing and you want this instrument to be added, please fill the form attached and sent it back to us. Happy scrolling: https://appn.at/resources/ Best regards, Jakub. Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090 ( tel:+43179623247090) M +43 664 8084 77090 ( tel:+43%20664%208084%2077090) jakub.jez(a)vbcf.ac.at Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at ( https://www.vbcf.ac.at) Chair, Austrian Plant Phenotyping Network (APPN ( https://www.appn.at/) ) and Support Group Member of ESFRI EMPHASIS ( https://emphasis.plant-phenotyping.eu/) project X:@VBCF_PlantS ( https://twitter.com/VBCF_PlantS) LinkedIn:www.linkedin.com/in/jezjakub FFG PHENOPlant ( https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/) : Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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talk announcement
by Katarzyna Retzer Feb. 3, 2025

Feb. 3, 2025

Hello, I would like to announce a guest talk at BOKU university, our guest will introduce a novel root quantification method from soil samples (obtained from pot or fieldexperiments), Professor Henrik Brinch-Pedersen (Aarhus University, Department of Agroecology - Crop Genetics and Biotechnology) Digital PCR aided direct root biomass determination and species profiling in soil samples 2. February 2025 at 10:00 Institute of Forest Ecology (IFE) seminar room: 02/10 Wilhelm-Exner-Haus Peter-Jordan-Straße 82 1190 Wien could you please annonce the talk on the APPN platform, thank you very much Kati Retzer Dr. Katarzyna Retzer Universität für Bodenkultur Institut für Waldökologie Peter Jordanstrasse 82 A-1190 Wien 00436763724837 >>> Katarzyna Retzer 16.11.2024 17:46 >>> Hi ich schicke die Einladung an dich, ich denke es sollte so passen glg Kati >>> "Jez,Jakub" <jakub.jez(a)vbcf.ac.at> 15.11.2024 16:16 >>> Hallo Kathi; Im speziellen weiß ich von der Stefanie Wienkoopstefanie.wienkoop(a)univie.ac.at Wenn an das APPN dann bitte Deine Einladung an mich oder direkt ans APPN schicken: APPN communityappn(a)lists.vbcf.ac.at LG, Jakub. From:Katarzyna Retzer <katarzyna.retzer(a)boku.ac.at> Date: Wednesday, 13. November 2024 at 16:35 To: Jez,Jakub <jakub.jez(a)vbcf.ac.at> Subject: Re: [EXT] Besuch auf der <boku 28 November: Markéta Pernisová Lieber Jakub, vielen Dank, ja das klingt gut, die Einladung kann sehr gerne weiter ausgeschickt werden, vll können die interessierten Leute kurz eine email an mich schreiben, damit ich wenn nötig einen größeren Raum organisiere, glg Kati >>> "Jez,Jakub" <jakub.jez(a)vbcf.ac.at> 11/13/2024, 11:24 AM >>> Hi Kathi, danke, dass Du an uns/APPN gedacht hast. Ist das, was kleines/privates oder könnte die Einladung auch die gesamte APPN community ausgeschickt werden? Ich weiß, dass am UBB und am GMI einige an root phenotyping interessiert sind und auch andere APPN member. LG, Jakub. From:Katarzyna Retzer <katarzyna.retzer(a)boku.ac.at> Date: Tuesday, 12. November 2024 at 20:46 To: Jez,Jakub <jakub.jez(a)vbcf.ac.at> Subject: [EXT] Besuch auf der <boku 28 November: Markéta Pernisová Lieber Jakub, ich hoffe es geht dir gut, am 28.11, um 11:00 wird die Marketa auf der Boku (Institut für Waldökologie, ExnerHaus, Peter-JordanStraße 82, 2ter Stock) einen Vortrag geben über Ihre Erfahrungen mit der Automatisierung von Wurzel- (aber nicht nur) Phänotypisierung wir haben uns überlegt ob du oder jemand von deinem Team vorbeikommen wollt, zum Austausch und Networking, glg Kati Dr. Katarzyna Retzer Universität für Bodenkultur Institut für Waldökologie Peter Jordanstrasse 82 A-1190 Wien 00436763724837 >>> "Jez,Jakub" <jakub.jez(a)vbcf.ac.at> 09/04/2024, 02:27 PM >>> Dear all, We just launched the first version of theAPPN phenotyping resources list, highlighting Austrian plant phenotyping related research infrastructures, instruments, hand-held devices and (software) tools. The goal is to establish a one-stop-shop for plant phenotyping, allowing efficient expertise/RI search and to facilitate and streamline collaborations within and beyond the APPN. In case any instrument is missing and you want this instrument to be added, please fill the form attached and sent it back to us. Happy scrolling: https://appn.at/resources/ Best regards, Jakub. Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090 ( tel:+43179623247090) M +43 664 8084 77090 ( tel:+43%20664%208084%2077090) jakub.jez(a)vbcf.ac.at Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at ( https://www.vbcf.ac.at) Chair, Austrian Plant Phenotyping Network (APPN ( https://www.appn.at/) ) and Support Group Member of ESFRI EMPHASIS ( https://emphasis.plant-phenotyping.eu/) project X: @VBCF_PlantS ( https://twitter.com/VBCF_PlantS) LinkedIn: www.linkedin.com/in/jezjakub FFG PHENOPlant ( https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/) : Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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APPN news: Goodbye + vacancy at the VBCF; 3rd AgroServ TNA call; BOKU phenotyping seminar.
by Jez,Jakub Nov. 22, 2024

Nov. 22, 2024

Dear APPN Friends! The time has come for a major change! Time, to start following and fulfilling my lifelong dreams about the oceans, marine ecosystems and scuba diving. I want to inform you that I terminated my working contract with the VBCF but will remain available until the end of this year. I do believe that my job at the VBCF and for the APPN is completed. PHENOPlant is fully operational and in service. The process of Austria joining the EU ESFRI EMPHASIS project is on a very good way and, currently, in the hands of the ministry. Thank you for all your valuable contributions which made APPN successful! It weas a great honor and pleasure to work with and learn from you. Every change creates opportunities: We are looking for my successor to lead my amazing team and collect all the scientific fruits of #PHENOPlant! https://www.viennabiocenter.org/fileadmin/user_upload/VBC/Career/Jobs/VBCF_… https://www.linkedin.com/posts/jezjakub_phenoplant-activity-726276475932478… Please like, share and apply! Further important plant phenotyping news: * The 3rd EU AgroServ call for transnational access (TNA) to EU agroecology research infrastructures is open: https://agroserv.eu/calls-and-applications/application-procedure Catalogue of Services/RIs: https://catalog.isia.cnrs.fr/catalog/2/services PHENOPlant: https://catalog.isia.cnrs.fr/catalog/2/services/240 Please note that PHENOPlant can be accessed also by Austrian universities/organizations/industry. The transnational approach doesn’t apply for ERICS. * EU ESFRI EMPHASIS ERIC Step 1 application was sent to the European Commission on October 31st. * BOKU seminar on “Shoot and root phenotyping – unexpected journey”, by Markéta Pernisová Ph.D. (PI, Faculty of Science, CEITEC). Thursday 28. November 2024 at 11.00 in the seminar room of Institute of Forest Ecology/BOKU. Seminar room: 02/10, Wilhelm-Exner-Haus, Peter-Jordan-Straße 82, 1190 Wien Host: Dr. Katarzyna Retzer I wish you all the best for your projects and future goals! Best regards, Jakub. P.S: Let’s stay in touch via LinkedIn: https://www.linkedin.com/in/jezjakub/

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RESOURCES - Austrian Plant Phenotyping Network
by Jez,Jakub Sept. 4, 2024

Sept. 4, 2024

Dear all, We just launched the first version of the APPN phenotyping resources list, highlighting Austrian plant phenotyping related research infrastructures, instruments, hand-held devices and (software) tools. The goal is to establish a one-stop-shop for plant phenotyping, allowing efficient expertise/RI search and to facilitate and streamline collaborations within and beyond the APPN. In case any instrument is missing and you want this instrument to be added, please fill the form attached and sent it back to us. Happy scrolling: https://appn.at/resources/ Best regards, Jakub. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project X: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub> [A picture containing text, indoor, wall Description automatically generated] FFG PHENOPlant<https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/>: Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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Open phenomics (top) management position: Interim Director-General EU ERIC EMPHASIS!
by Jez,Jakub July 5, 2024

July 5, 2024

Dear all, the European Research Infrastructure for Plant Phenotyping, EMPHASIS, is on the lookout for a visionary leader to join our team as the future EMPHASIS Interim Director-General! This pivotal role is a perfect blend of science and strategy, designed for an individual who can navigate and thrive in a multi-stakeholder ecosystem. Director-General will be at the forefront of EMPHASIS’ strategic development and expansion and will have a robust scientific background paired with exceptional managerial experience. If you are ready to impact plant phenotyping on a European and global scale, we want to hear from you! Apply via https://candidates.perrettlaver.com/vacancies/4259/interim_directorgeneral/. Please feel free to share. Have a great weekend, Jakub. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project Twitter: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub>

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Free access to PHENOPlant: 2nd AgroServ call will open soon + webinar announcement
by Jez,Jakub June 21, 2024

June 21, 2024

Dear all, There is another chance to get funded access to PHENOPlant (and many, many more European AgroEcology relevant RIs) via the 2nd AgroServ TNA call! The application period for the second Call for projects by AgroServ will officially open on June 27th, with a deadline to submit proposals set for September 30th at 12:00 PM (CEST). https://agroserv.eu/ 2nd call webinar and QA, 4th July: https://agroserv.eu/blog/2nd-call-webinar Apply here: https://agroserv.eu/calls-and-resources Catalogue of services: https://isia.cnrs.fr/catalog/service/list/agroserv PHENOPlant in the catalogue of services: https://isia.cnrs.fr/network/service/read/240 Feel free to contact me in case of any questions. Best, Jakub. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project Twitter: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub> FFG PHENOPlant<https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/>: Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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INVITATION: 4th Austrian Plant Phenotyping Network Meeting - 23rd May, 2024, VBC.
by Jez,Jakub May 8, 2024

May 8, 2024

Dear colleagues and friends, It is our pleasure to invite you to the 4th Austrian Plant Phenotyping Network (APPN) Meeting, which will take place May 23rd, 2024, at the Vienna BioCenter, IMP lecture hall. Free Registration and abstract submission are open: https://appn.at/events/4thappn/ As the last years, the meeting will be free to attend, thanks to the support of our company partners. This year we aim for a national focus on recently established plat phenotyping infrastructures, instrumentation, and methodologies. Covering topics in basic- and applied plant research from Arabidopsis, via crop plants up to trees. Roots and shoots. Lab to field. Success stories and setbacks. We are looking forward to receiving your abstracts for talks and posters! Confirmed speakers: Carlos Trujillo-Moya & Ahmad Muhammad (BFW) – “High-throughput phenotyping integrated with metabolomics and transcriptomics reveals a new fine-scale method to study drought stress in Norway spruce seedlings“ Claudia Jonak (AIT) – H2020 project: “Multilayered phenotyping to uncover resilience to temperature and water stress in camelina sativa” Markus Puschenreiter (BOKU/MUL) – “Beneficial effects of carbon from methane plasmalysis on soil conditions and plant growth” Markus Teige (UniVie) – H2020 project: “ADAPT – Accelerated development of multiple – stress tolerant potato” Verena Ibl (UniVie) – “A bench-top Dark-Root device built with LEGO® bricks enables a non-invasive plant root development analysis in soil conditions mirroring nature“ Dominik Grosskinsky (AIT) – „Sensor-based and physiological phenotyping approaches to support crop improvement” David Major (VRVis) – “Satellite image super-resolution for enhanced agriculture monitoring” Please help to share this invitation in your organizations and networks! The flyer is attached to this mail. Looking forward to meet you in person. Best regards, Jakub Jez, on behalf of the organizing committee. P.S.: Yes, there will be food, wine and music. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project Twitter: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub> [A picture containing text, indoor, wall Description automatically generated] FFG PHENOPlant<https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/>: Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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IPPN Newsletter Q3/2023
by Jez,Jakub Oct. 24, 2023

Oct. 24, 2023

View this email in your browser<https://mailchi.mp/c5f03145ff43/ippn-newsletter-q32021-9397638?e=653944e04e> [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/8df04065-21a2-43…] NEWSLETTER (Q3 2023) * NEWS * What we read & watch... * INSIDE IPPN * UPCOMING EVENTS & CONFERENCES * CALLS & SPECIAL ISSUES * RECENT PUBLICATIONS * PLANT PHENOTYPING JOBS NEWS [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/dec90dbf-e639-f8…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> IPPN: Co-host found for IPPS2024!! ________________________________ We are delighted to share some exciting news regarding the upcoming IPPS8 in 2024! The IPPN General Assembly recently voted on determining the co-host for this highly-anticipated event. As outlined in the IPPN conference roadmap, IPPS8 is scheduled to take place in the Americas, and we had two remarkable institutions in contention for this honor - the University of Nebraska-Lincoln<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> and the North Carolina Plant Science Initiative<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>. After careful deliberation and casting their votes, our dedicated IPPN members have reached a decision. We are thrilled to announce that the University of Nebraska-Lincoln has emerged as the chosen co-host for IPPS8! This decision marks a significant step in the preparations for IPPS8, which is expected to be a cornerstone event in the field of plant phenotyping. The University of Nebraska-Lincoln brings a wealth of expertise and resources to the table, ensuring that this conference will be a resounding success. Now, the IPPN and the University of Nebraska-Lincoln are embarking on the planning process for IPPS8. The tentative timeframe for IPPS8 is during the autumn of 2024. Please stay tuned for updates as we work diligently to finalize the details and provide you with more information about this exciting event. We extend our heartfelt gratitude to all IPPN members for their active participation in the voting process, and we look forward to your continued support as we move closer to IPPS8. Thank you for being an essential part of the IPPN community, and we can't wait to make IPPS8 a remarkable success together! [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/de94c618-3789-9e…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [AgroServ] OPEN CALL for pre-proposal for access to facilities addressing diverse questions in agroecology ________________________________ The Horizon Europe project AgroServ<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> is pleased to announce the official launch of its first call for proposals open to scientists<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> from academia and/or the industry: DEADLINE FOR PRE-PROPOSALS: October 23rd, 2023, 12:00 am CEST. The Transnational Access Call is open to scientists who want to access the research services and installations managed by the AgroServ consortium and covering more than 8 scientific domains<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>. Researchers or research groups interested in accessing these services should submit proposals of projects that address interdisciplinary topics related to agroecology to enable the interaction of communities of researchers in widely separated areas. Access is granted on the basis of scientific excellence to ensure feasibility of the projects and their scientific quality. AgroServ enables access to 143 research installations<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> across Europe for researchers from academia and the industry (physical, remote and virtual access). The installations can be used for experiments with scientific or technological objectives to answer basic and applied questions related to sustainable and resilient agriculture and agroecological transitions. The application to access our research facilities is a two-step process. Learn more about the application procedure and send your pre-proposals before October 23rd, 2023, 12:00 am CEST<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/f89b9cce-49d4-b0…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Wrap up: PhenoVeg 2023 ________________________________ On 26-27 September 2023, 105 participants from 10 countries, representing advanced research institutes and private companies, came together at World Vegetable Center<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> headquarters in Taiwan to share their experiences on the latest developments in phenotyping technologies, and how to apply the data produced into concrete outcomes for improved plant breeding. Roland Schafleitner (World Vegetable Center) gave the welcome address, before the opening session set the scene. Over two days, participants listened intently to 20 detailed presentations, posters presenters and demonstrations. Jennifer Clarke (University of Nebraska-Lincoln<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>) summed up the event nicely. “I was impressed by the synergies between basic and applied research, and to see such a vibrant and dynamic community including many keen young researchers. We are certainly advancing towards solving the problems of climate change and food security, and from what I have seen these days, I am optimistic that we will achieve our goals.” Book of abstracts<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> The event was organized by the World Vegetable Center in collaboration with the Taiwan Agricultural Research Institute, National Taiwan University and Academia Sinica, with financial support from the Ministry of Agriculture of Taiwan. This article was provided by Dr. Roland Schafleitner, WorldVeg) [https://mcusercontent.com/a7608e25dded330d4a8ea2658/_compresseds/cb425678-2…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Chinese Academy of Science representatives tour EU to foster collaboration ________________________________ A group of Chinese scientists from the Chinese Academy of Sciences<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>, Huazhong Agricultural University<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>, the companies Sanya Boruiyuan Technology and PhenoTrait<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> visited several institutions within Europe and discussed how plant phenotyping can foster advancement towards sustainable agriculture. Along the way they visited destinations in France (INRAe<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>), The Netherlands (WUR<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>) & Germany (FZJ, IBG-2<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> & IPK<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>). The participants elaborated new phenotyping approaches by demonstrating use cases, visiting the facilities and field sites and discussing international interaction within the Research Infrastructure EMPHASIS <https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> and International Plant Phenotyping Network<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>. Technology Section [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/0469b6d4-b732-2f…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> UK's Advanced Plant Growth Centre Hits a Key Milestone ________________________________ One of Europe’s newest phenotyping platforms has awarded the contract for the design and construction of plant growth and phenotyping facilities. The Advanced Plant Growth Centre at the James Hutton Institute in Dundee, Scotland is a £27M facility that aims to use next generation high precision-controlled environment facilities linked to state-of-the-art phenotyping to accelerate the development of climate resilient crops. The facility, which is scheduled to open in 2024 will provide a total of 12 advanced and independently controlled growth rooms with a range of functionalities. All rooms are designed with the capacity to grow a range of crops with a floor area of over 10 m2 and a height of 2.7 m and in addition to temperature and humidity control, have the capacity to maintain CO2 concentration from ambient to 1500 mmol mol-1. Four rooms are designed with photobiology to the forefront with seven channel LED control, spanning areas of the spectrum from UVA to far red and the capacity to deliver up to 600 mmol m-2 s-1 PAR at canopy level. The remaining eight rooms have been designated as high light growth rooms delivering up to 1500 mmol m-2 s-1 PAR in a simulated daylight spectrum with additional independent control of blue (470 nm), deep red (680 nm) and far red (735 nm) allowing dynamic lighting to mimic spectral changes as the sun traverses the sky. Four of the high light rooms are to be connected by conveyors capable of handling a range of pot configurations to a range of state of the art imaging stations and providing the flexibility to mage everything from Arabidopsis to cereals, potatoes and woody shrubs with a capacity ranging from 200 – 4000 plants depending on size. Imaging facilities include top and side view RGB, dynamic chlorophyll fluorescence with dark and light adaptation, VNIR/SWIR hyperspectral imaging and 3D laser triangulation scanner. The platform is additionally equipped with a weighing-watering station providing information on crop water use. Following a rigorous procurement process and the submission of three excellent quality tenders, the Advanced Plant Growth Centre are pleased to announce that Photon Systems Instruments have been appointed to build and commission the growth rooms and phenotyping facility. (Text & pictures provided by Dr Robert D Hancock<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>, The James Hutton Institute) [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/8a4becdf-677c-48…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Lincoln Plant Phenotyping Platform (L3P) : A semi-automated robotic phenotyping platform ________________________________ The robotic phenotyping platform, L3P, allows non-invasive and digital phenotyping of above-ground canopy of crop plants grown under field conditions. The high-throughput phenotyping platform is equipped with dual 3D laser scanners (Phenospex scanners) and diverse 2D sensors (multispectral, hyperspectral, and thermal cameras). The platform is a reconfigurable modular robot with four-wheel drive and steering with good traction in rough terrains. It can comfortably pass over fully-grown cereal crops. The platform is fully electric and runs on 48 V lithium-ion batteries, usually lasting for 6-8 hours. All these modules of the platform can be further tailored. The platform allows simultaneous collection of 3D data and diverse sensors data at the plot level under field conditions, enabling the derivation of different canopy architectural traits through 3D modelling giving the opportunity to examine genotypes for subtle changes in canopy architectural and resource use efficiency traits. (Text & pictures provided by Dr Ravi Valluru<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> , University of Lincoln) What we read & watch... [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/38ebfbf5-c917-1e…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> NEW: NPEC growth room virtual tour ________________________________ You can virtually access the plant growth module of the The Netherlands Plant Eco-phenotyping Centre (NPEC) yourself online. These growth rooms are used to analyse thousands of plants in a single experiment. The rooms are packed with advanced phenotyping equipment to provide rapid insight into how different plant varieties behave in varying climate conditions. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/f4add00a-aaec-f2…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Blog post: Calculating drought related plant parameters ________________________________ Dutch sensor developer Phenospex<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>, most known for their 3D laser scanner "PlantEye", are providing regular blog posts enabling users to make most of their plant phenotping equipment. Although this article is directed towards users of Phenospex' systems, much can be derived & used also for other users. This method paper provides a detailed explanation of how data collected from DroughtSpotter<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> and PlantEye<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> can be transformed into vital parameters that characterize the water use and transpiration response of plants. These parameters include: * Evapotranspiration signal * Evapotranspiration (g) * Evapotranspiration rate (g/h) * Normalized evapotranspiration rate (g/h/m2) * Water Use Efficiency (WUE) By utilizing these parameters, it becomes easier to evaluate and compare different cultivars, treatments, or environmental conditions in terms of their enhanced ability to withstand drought. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/6e755a81-90a3-95…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Blog post: New Plant Level Statistics for Phenotyping Vegetable Crops ________________________________ In the ever-evolving landscape of plant phenotyping, there's a pressing need to get more information about the health and growth of the plants growing in experimental fields. Our drone image processing software MAPEO now also offers a plant-level delineation feature – the solution for mapping individual plant. This new feature allows you to extract statistics from your drone products from down the plant level up to the level of plot or field. This feature is specifically interesting for drone based phenotyping of vegetable crops for which most plot delineation solutions fail short. Expert Sam Oswald explains more about the new plant delineation features and how it can improve your phenotyping. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/25217c81-0e0f-75…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Press release: Government backs climate-resilient pasture program ________________________________ The New Zealand government is supporting a climate-resilient pasture program aimed at boosting the sustainability of farming. This initiative, backed by government funding, focuses on developing more robust pastures that can better withstand the challenges posed by climate change, such as drought and extreme weather. The program will not only improve environmental outcomes but also contribute to the long-term resilience and productivity of the country's agricultural sector. It is part of New Zealand's ongoing commitment to addressing climate change and ensuring a sustainable future for its agricultural industry. IPPN member AgReaserch <https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> is leading and implementing the new project co-funded by the NZ government, seed industry (Barenbrug and PGGW (DLF) as well as the farmer Levy based organisation DairyNZ. This is a new project with >$20 m investment with the New Zealand government chipping in $8,4m. A significant part of this funding is allocated to the development of phenomics tools for ryegrass and white clover trait measurement, which is led by IPPN representative Kioumars Ghamkhar. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/df8a008e-2a90-6d…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Purdue: Phenotyping Greenhouse Groundbreaking ________________________________ Purdue’s College of Agriculture celebrated the groundbreaking for the university's new phenotyping greenhouse on September 15. The new facility will enable plants to be integrated into the existing controlled environment phenotyping facility, and allow more research discoveries related to plant health, nutrition, drought and disease stress, and root health. (Link to original article)<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/51868611-8d41-2c…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Video playlist: IPPS2022 Keynotes now available ________________________________ It took some time, however now we have managed to upload all the keynote talks of last year's IPPS2022 onto our IPPN Youtube-Channel<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>. For anyone who missed one of these and/or couldn't attend in-person in Wageningen, you can now watch part of this amazing conference on demand. IPPS2022: In 2022, over the span of 5 days (September 26- 30) the international plant phenotyping community gathered in the city of Wageningen. In total, almost 450 attendees from more than 44 countries took part in the conference. More than 25 sponsors & exhibitors contributed. 7 Keynotes, 22 Session-talks were held according to program. 173 Poster submissions were shown in dedicated poster rooms & 3 poster sessions. INSIDE IPPN [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/610888b2-3816-bc…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> IPPN Board Elections scheduled for end of 2023 ________________________________ Change is on the horizon as we approach the end of the legislative period for the current IPPN Board. The board's term, which has spanned four years, will come to a close at the beginning of 2024. Since the end of summer, we have been calling upon our valued IPPN members to participate in the process of suggesting potential board members. The democratic essence of our organization is upheld through an inclusive voting process. At the end of 2023, we will conduct the voting to select the new board members. This process will be carried out via email, ensuring that all IPPN members have the opportunity to participate, voice their preferences, and contribute to the IPPN's decision-making. It's worth noting that this transition will result in the new board becoming active in the first quarter of 2024. The new leadership will bring fresh perspectives, enthusiasm, and expertise to the IPPN, ensuring the continued growth and success of our organization. As we move forward into this exciting period of change, we extend our deepest gratitude to all current IPPN board members for their continued support and active engagement in shaping of our community. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/d31becd4-1d5d-a5…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Two New IPPN Members: WorldVeg & WPS ________________________________ During summer 2023, two new full members joined IPPN: 1) WorldVeg Bringing expertise in vegetable- & specialty crops, into our network, with Dr. Roland Schafleitner (Program Leader: Vegetable Diversity & Improvement; Head, Molecular Genetics) being IPPN representative. 2) WPS Dutch horticulture & automation expert WPS Michael Meijler will represent WPS inside IPPN & will bring his expertise in controlled environment phenotyping systems into IPPN's industry Section. UPCOMING EVENTS & CONFERENCES (A full & frequently updated events list can be found here<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>) [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/b6ed207e-56f2-6e…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Fraunhofer Pheno-Talks: Next webinar's registration open; 25.10.; 15:30 ________________________________ Guest: Dr. Jan Behmann, Bayer AG, Machine Learning & HDBD program lead Topic: Phenotyping in plant protection research: End-to-end data flow is key The International Plant Phenotyping Network is supporting this webinar series to encourage the dissemination of knowledge, technology, and applications in the field of plant phenotyping. The Fraunhofer Pheno-Talks series<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> will provide a platform to discuss the latest trends, developments and challenges in plant phenotyping. The Fraunhofer Pheno-Talks is a colaboration between IPPN's Phenomics Webinars & Fraunhofer IIS/EZRT. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/f5bdcf2b-90f3-96…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/55da11db-f6d3-a9…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> PhenoRob Networking Event: New Methods in Weed Control; 19.10.23; Bonn, Germany ________________________________ PhenoRob cordially invites you to join their upcoming networking event on 19.10.2023, 1:00 PM - 5:00 PM, at Universitätsclub Bonn to exchange ideas with stakeholders from industry, politics, farmers and end-users on new methods in weed control. The event will be opened by the Head of the Digitalization Uni at the Federal Ministry of Food and Agriculture, Dr. Steffen Beerbaum. Participation is free of charge for you. Program & F<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>lyer<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/a4f82a94-f049-71…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> 3rd African Plant Breeders Association Conference; 23.10. - 27.10.2023; Ben guerir, Morocco ________________________________ The African Plant Breeders Association (APBA) Conference was initiated in 2019 to disseminate the latest knowledge and achievements in the field of agriculture, to enhance research and development (R&D) for sustainable agriculture production systems in Africa. APBA conference brings together around 400 international scientists and experts representing different national and international institutions (CGIAR research centers), universities, research institutions, private companies, donors, etc.). It is a good opportunity for plant breeders, researchers, students, private companies as well as national agriculture policy makers to share their knowledge and discuss their research findings and recent achievements. Such interactions will help in preparing strategies and partnerships to tackle future challenges in R&D for the African continent and open opportunities for potential collaborative actions. Two previous APBA conferences have been successfully organized in Accra, Ghana (2019) and Kigali, Rwanda (2021). Both events significantly contributed to the promotion of international collaborations in basic, fundamental, applied and strategic research areas particularly in the field of crop improvement. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/45ed7d29-228a-ce…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Metrology for Agriculture and Forestry 2023; 06-08.11.; Pisa, Italy ________________________________ Since the first edition, MetroAgriFor intends to create an active and stimulating forum where academics, researchers and industry experts in the field of measurement and data processing techniques for Agriculture, Forestry and Food can meet and share new advances and research results. Attention is paid, but not limited to, new technologies for agriculture and forestry environment monitoring, food quality monitoring, metrology-assisted production in agriculture, forestry and food industries, sensors and associated signal conditioning for agriculture and forestry, calibration methods for electronic test and measurement for environmental and food applications. THEMATIC AREAS * Metrology, quality assurance and standardisation; * Sensors and measurement techniques; * Data analysis; * Applications. WORKSHOP TOPICS * Sensor networking and integration; * Approaches and tools for measuring Food Quality; * Soil analysis, mapping and monitoring; * Crop analysis, mapping and monitoring; * Precision agriculture, forestry and livestock farming; * Measurements for agriculture, forestry and environment; * Agroclimatic measurements. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/5bab5b7c-6771-33…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> 7th Conference on Cereal Biotechnology and Breeding; 07.-09.11.; Werningerode, Germany ________________________________ EUCARPIA is glad to announce that the Conference on Cereal Biotechnology and Breeding (CBB7) will be held as a presence meeting in Wernigerode, Germany. In addition, the 18th EWAC – The European Cereals Genetics Co-operative Conference will be prepared as a satellite meeting. Both conferences will be jointly organised with the Cereals Section of EUCARPIA - the European Association for Research on Plant Breeding. Participants may submit different abstracts to both events. The program will cover a wide spectrum of topics dealing with cereals genetics, breeding and biotechnology. It will be a platform for extending research networks and the initiation of new collaborations. In particular, we want to encourage young scientists to participate to CBB7 and to present their recent results. Therefore, we will offer 6 free student registration fees which will be selected and awarded based on the abstract submissions. Please indicate your interest in applying for free subscription. The plant phenotyping session to be held on Thursday, November 9th 2023 will be hosted & rganized y IPPN working group chair Thomas Altmann (IPK Gartersleben) [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/71e07f69-e4ae-2e…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Nordic Plant Phenotyping Workshop & final NordPlant Meeting, 23.-24.11.; Båstad, Sweden ________________________________ NordPlant is coming to its sixth and last year. With this last annual meeting (22-23 November), we will try to sum up the last years’ progress around plant phenotyping and modelling for future climates, but foremost we will look into the future of plant phenotyping! Confirmed keynote speakers are IPPN working group chair David Rousseau (INREA): "Challenge and opportunities for deep learning-based computer vision in plant imaging", and Shawn Kefauver (University of Barcelona): "AI in plant phenotyping - everywhere, all the time, or maybe not?" We will also have presentations of the NordPlant researchers and Øystein Opedal (LU) "Evolvability and constraints in plant evolution". The full program is here<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> The meeting will be in Hotell Skansen, Båstad, Sweden. The meeting will be back-to-back with the NPPN annual workshop 23-24 November. A number of rooms at Hotell Skansen will be pre-booked for participants. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/ff672b4b-143d-25…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> International Plant & Animal Genome / PAG 31, 12.-17.01.24; San Diego, USA ________________________________ The Plant and Animal Genome Conference is designed to provide a forum on recent developments and future plans for plant & animal genome projects. Consisting of technical presentations, poster sessions, exhibits and workshops, the conference is an excellent opportunity to exchange ideas, and applications on this internationally important project. Early Registration - accepted up through and including October 31, 2023. Standard Registration - November 1, 2023 through January 17, 2024. [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/f08fbd53-682a-4a…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> SPIE Photonics West, 27.01-1.02.24; San Francisco, USA ________________________________ This conference aims at bringing together these different aspects of photonic technologies in the field of plant sciences, agricultural research and the food chain from a technical perspective. SPIE is an event where the latest advances are shared by the optics and photonics community in lasers, biomedical optics and biophotonic technologies, quantum, and optoelectronics. As part of this conference a dedicated session relevant to plant sciences & plant phenotyping will be organized: Photonic Technologies in Plant and Agricultural Science Conference Chairs: Dag Heinemann, Hannoversches Zentrum für Optische Technologien (Germany); Gerrit Polder, Wageningen Univ. & Research (Netherlands) Program Committee: Bettina Berger, The Univ. of Adelaide (Australia); Thomas Dehoux, Univ. Claude Bernard Lyon 1 (France); Kareem Elsayad, Medizinische Univ. Wien (Austria); Hirofumi Kadono, Saitama Univ. (Japan); Tobias Kreklow, HAIP Solutions GmbH (Germany); Wouter Saeys, KU Leuven (Belgium); Merve Wollweber, Laser Zentrum Hannover e.V. (Germany); Chenxu Yu, Iowa State Univ. of Science and Technology (United States) POST-DEADLINE SUBMISSIONS ACCEPTED UNTIL 11-December [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/68bb7535-9ac6-7d…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> North American Plant Phenotyping Network (NaPPN) Annual Conference, 13.02.2024 - 15.02.2024 – West Lafayette, Indiana, USA ________________________________ Conference registration is now open! Registration information can be found here: https://www.plantphenotyping.org/conference-registration<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>. Note that a significant Early Bird discount ends on 12/1/2023, so be sure to register early! There is also an application to be considered for travel funding to attend the 2024 conference, which can be found here: https://www.plantphenotyping.org/travel-awards<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> For more information about the NAPPN Annual Conference, including keynote speakers, a draft program/agenda, and travel information to the venue, please visit the conference web page: https://www.plantphenotyping.org/conference-home<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> The NAPPN Annual Conference Call for Abstracts deadline has been extended to October 30th! CALLS & SPECIAL ISSUES [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/e9b5b5d2-62e6-f8…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Plant Phenomics: Object Detection & Image Segmentation for Plant Phenotyping; Submission Deadline: December 31, 2023 ________________________________ Object detection and image segmentation are important research topics in computer vision and have been widely applied in real-world applications. Recently, object detection and image segmentation using deep learning techniques have played important roles in plant phenotyping tasks, such as identifying crop diseases and insects and measuring and counting plant organs (leaves, stems, fruits, etc.). However, these techniques also have certain unavoidable drawbacks; for example, acquiring, annotating, and maintaining large datasets for phenotyping tasks are still difficult and expensive. They are also often subjected to specific environmental conditions and target species. This special issue welcomes original research articles, review articles, perspectives, and database/software articles related to object detection and image segmentation and related methodologies, tools, and datasets. Specific topics of interest include 2- and 3-dimensional-based: * Object detection, segmentation, tracking * Domain adaptation * Synthetic data generation * Unsupervised/self-supervised learning * Multiple scales (spatial, reflectance) data fusion Guest Editors Wei Guo, University of Tokyo, Japan Ian Stavness, University of Saskatchewan, Canada Etienne David, Hiphen, France Wenli Zhang, Beijing University of Technology, China Yosuke Toda, Nagoya University, Japan [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/f9859f4d-7676-be…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Plant Phenomics: Technologies in the Metaverse for Ultra-precision Agriculture; Submission Deadline: December 31, 2023 ________________________________ Since the 1970s, we have been living in the era of the internet. That quickly shifted to a mobile internet era in the 2000s. With about 60 percent of the global population now being active internet users, the internet has almost 100 percent penetration into our everyday lives. Today, we are at the cusp of the next new internet generation, the era of the metaverse. Just as in many aspects of our lives, the concept of the metaverse has the potential to have a deep impact on agriculture to make it ultra-precise, climate-smart, sustainable, productive, profitable, safe, and widely accessible. With this motivation, we have been organizing the International Workshop Series on Machine Learning for Cyber-Agricultural Systems (MLCAS 2022&2023) as well as the AI for Agriculture and Food Systems workshop (AIAFS 2023) as a part of the Association for the Advancement of Artificial Intelligence (AAAI 2023) conference. These events have been bringing together academic and industrial researchers and practitioners in the fields of machine learning, data science, and engineering, plant sciences, and agriculture. In such a collaborative effort, the workshops intend to identify and discuss major technical challenges and recent results related to this broad area. We are exploring the recent advances in building digital twins or virtual representations of plants, plots to fields using advances in sensing, computational approaches, machine learning, scientific principles, and domain knowledge. More broadly, we are also interested in discussing the techniques for introducing the metaverse to agriculture, such as data transmissions and management, human-computer interaction, and relevant AI tools. This special issue will publish selected papers from MLCAS 2022&2023 and AIAFS 2023 as well as direct contributions. Specific topics of interest will include (but are not limited to): high-performance satellite imagery, proximal and remote sensing, IoT, 5G, cloud/edge computing, big data, cyber-Ag systems, AI, machine learning, computer vision, natural language processing, VR/AR/XR, Graphics and visualization, and Digital Twin techniques, computational modeling and crop modeling – all in the context of agriculture. This special issue welcomes perspectives, reviews, algorithms, methodologies, tools, and datasets papers. Guest Editors Wei Guo, Graduate School of Agriculture and Life Sciences, University of Tokyo, Japan Soumik Sarkar, Mechanical Engineering, Iowa State University Baskar Ganapathysubramanian, Mechanical Engineering, Iowa State University Asheesh K. Singh, Department of Agronomy, Iowa State University Arti Singh, Department of Agronomy, Iowa State University Masayuki Hirafuji, Graduate School of Agriculture and Life Sciences, The University of Tokyo Seishi Ninomiya, Graduate School of Agriculture and Life Sciences, The University of Tokyo [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/2e57f3bb-9e72-b6…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Plants: Plant Phenomics for Precision ; Submission Deadline: December 31, 2023 ________________________________ Plant phenomics has been heavily applied for plant breeding ever since its advent in the form of high throughput phenotyping using various methods. However, it has huge potential for smart farm in both greenhouse and field, field managements, yield prediction, etc., which are in the precision agricultural category. This Special Issue of Plants seeks to stimulate and collect studies in precision agriculture using phenomics. Any topic or technology including high throughput phenotyping, field management, plant breeding, analysis methods, field heterogeneity, remote sensing, image analysis, vegetative index, or smart farm will be considered for publication as long as it is related to precision agriculture combined with plant phenomics. Conceptualization for potential application using phenomics for precision agriculture will also be considered for publication. Keywords * phenomics * precision agriculture * high throughput phenotyping * field management * plant breeding * analysis methods * field heterogeneity * remote sensing * image analysis * vegetative index * smart farm [https://mcusercontent.com/a7608e25dded330d4a8ea2658/images/e041b816-81ab-fe…]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Plant Phenomics: Affordable Phenotyping to Enable Desirable Discoveries in Plant Research; Submission Deadline: November 30, 2024 ________________________________ Many plant research groups and exploratory studies have a restricted budget to work with. To enable research, exploration, and development that require plant phenotyping but have limited resources, affordable solutions involving low-cost equipment and open analysis software are essential. In recent years, due to rapid advances in remote sensing, computer vision (CV), and artificial intelligence (AI) techniques, many cost-effective phenotyping solutions have been introduced to plant research, ranging from in-field robots and unmanned aerial vehicles to lab-based imaging devices and openly accessible analytic toolkits. These advances provide affordable phenotyping and trait analysis a great platform to connect methodological progresses with a wide coverage of applications in plant research, including gene discoveries, breeding and genetics, cultivation and agronomy, growing and crop production. The main objective of this special issue is to present recent developments in affordable phenotyping and trait analysis that have or potentially could lead to valuable biological discoveries in different areas of plant sciences, for either fundamental or applied purposes. We welcome submission of manuscripts in affordable acquisition systems (e.g. novel image and IoT sensors), interpretation methods and algorithms powered by AI and CV techniques, big data management, metadata and ontologies, and low-cost do-it-yourself (DIY) devices, which can be deployed either indoor or in the field, with varied temporal frequencies and at different scales. Articles must be original research, not published elsewhere. All articles will go through a rigorous peer-review process as per the journal norms. Review articles around the above topics are also encouraged. Guest Editors Ji Zhou, Cambridge Crop Research NIAB, UK; Nanjing Agricultural University, China David Rousseau, INRAe Angers, Université d’Angers, France Mark Mueller-Linow, Jülich Plant Phenotyping Center (JPPC), Forschungszentrum Juelich, Germany Vinicius Lube, Netherlands Plant Eco-phenotyping Centre (NPEC), Utrecht University, Netherlands Sebastian Eves-van den Akker, University of Cambridge, UK RECENT PUBLICATIONS de Brito, G. G.; Campos, A. D.; de Melo, C. L. P.; Bertagnoli, P. F.; Klumb, E. K.; da Silva Porto, F. G.; et al.. (2023) Integrating Non-photochemical Quenching (NPQ) Measurements for Identifying Flood-Tolerant Soybean Genotypes in the Era of Climate Change; Journal of Agricultural Science; Vol. 15, p. 39 – 57, No. 10; 2023. DOI:10.5539/jas.v15n10p39<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Dinh, L.T., Ueda, Y., Gonzalez, D. et al. (2023) Novel QTL for Lateral Root Density and Length Improve Phosphorus Uptake in Rice (Oryza sativa L.). Rice 16, 37 (2023). https://doi.org/10.1186/s12284-023-00654-z<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Ezhilmathi Angela Joseph Fernando, Michael Selvaraj, Kioumars Ghamkhar (2023) The power of phenomics: Improving genebank value and utility, Molecular Plant, Volume 16, Issue 7, Pages 1099-1101, ISSN 1674-2052, https://doi.org/10.1016/j.molp.2023.05.011.<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> M. I. Gocke, J. Guigue, S. L. Bauke, D. Barkusky, M. Baumecker, A. E. Berns, E. Hobley, B. Honermeier, et. al. (2023) Interactive effects of agricultural management on soil organic carbon accrual: A synthesis of long-term field experiments in Germany Geoderma, vol. 438, p. 116616, 2023. doi:https://doi.org/10.1016/j.geoderma.2023.116616<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Sofia Hadir, Thomas F. Döring, Eric Justes et al. (2023) Root growth and belowground interactions in spring wheat - faba bean intercrops, 16 August 2023, PREPRINT (Version 1) available at Research Square https://doi.org/10.21203/rs.3.rs-3164021/v1<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> I. M. Hernández-Ochoa, T. Gaiser, H. Hüging, and F. Ewert, (2023) Yield components and yield quality of old and modern wheat cultivars as affected by cultivar release date, N fertilization and environment in Germany,” Field Crops Research, vol. 302, p. 109094, . doi:https://doi.org/10.1016/j.fcr.2023.109094<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Lärm, L., Bauer, F.M., Hermes, N. et al. (2023) Multi-year belowground data of minirhizotron facilities in Selhausen. Sci Data 10, 672 (2023). https://doi.org/10.1038/s41597-023-02570-9<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Lagergren, J., Pavicic, M., Chhetri, H. B., York, L. M., Hyatt, P. D., Kainer, D., Rutter, E. M., Flores, K., Bailey-Bale, J., Klein, M., Taylor, G., Jacobson, D., Streich, J. (2023). Few-shot learning enables population-scale analysis of leaf traits in Populus trichocarpa. Plant Phenomics 5. 0072. DOI: 10.34133/plantphenomics.0072<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Liu C, Mentzelopoulou A, Papagavriil F, Ramachandran P, Perraki A, et al. (2023) SEC14-like condensate phase transitions at plasma membranes regulate root growth in Arabidopsis. PLOS Biology 21(9): e3002305. https://doi.org/10.1371/journal.pbio.3002305<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> S. Paulus and B. Leiding (2023) Can Distributed Ledgers Help to Overcome the Need of Labeled Data for Agricultural Machine Learning Tasks? Plant Phenomics, vol. 5, 2023. doi:10.34133/plantphenomics.0070<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Rajonandraina T, Ueda Y, Wissuwa M, Kirk GJD, Rakotoson T, Manwaring H, Andriamananjara A and Razafimbelo T (2023) Magnesium supply alleviates iron toxicity-induced leaf bronzing in rice through exclusion and tissue-tolerance mechanisms. Front. Plant Sci. 14:1213456. doi: 10.3389/fpls.2023.1213456<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> M. H. ur Rahman, H. E. Ahrends, A. Raza, and T. Gaiser, (2023) Current approaches for modeling ecosystem services and biodiversity in agroforestry systems: Challenges and ways forward,” Frontiers in Forests and Global Change, vol. 5. doi:10.3389/ffgc.2022.1032442<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> T. Selzner, J. Horn, M. Landl, A. Pohlmeier, D. Helmrich, K. Huber, J. Vanderborght, H. Vereecken, S. Behnke, and A. Schnepf, (2023) 3D U-Net Segmentation Improves Root System Reconstruction from 3D MRI Images in Automated and Manual Virtual Reality Work Flows, Plant Phenomics, vol. 5, p. 76, 2023. doi:10.34133/plantphenomics.0076<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Tazifor Tchantcho M, Zimmermann E, Huisman JA, Dick M, Mester A, van Waasen S. (2023) Low-Pass Filters for a Temperature Drift Correction Method for Electromagnetic Induction Systems. Sensors. 2023; 23(17):7322. https://doi.org/10.3390/s23177322<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Wallach, D., Palosuo, T., Thorburn, P. et al. (2023) Proposal and extensive test of a calibration protocol for crop phenology models. Agron. Sustain. Dev. 43, 46 . https://doi.org/10.1007/s13593-023-00900-0<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Xie P, Du R, Ma Z, Cen H. (2023) Generating 3D Multispectral Point Clouds of Plants with Fusion of Snapshot Spectral and RGB-D Images. Plant Phenomics 2023;5:Article 0040. https://doi.org/10.34133/plantphenomics.0040<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> PLANT PHENOTYPING JOBS (A full & frequently updated list of vacancies can be found here<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…>) Open Positions Postgraduate Research Associate, BOKU, Vienna, AUT<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Research Assistant – Remote Sensing / Digital Agriculture, Agriculture and Agri-Food Canada, CAN<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Service Engineer, Phenospex, USA<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Service Engineer, Phenospex, NL<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Spatial Data Engineer - Australian Plant Phenomics Facility (APPF), AUS<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Data Librarian -Australian Plant Phenomics Facility (APPF), AUS<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Project Manager - Australian Plant Phenomics Facility (APPF), AUS<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Software Engineer - Australian Plant Phenomics Facility (APPF), AUS<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Senior Software Engineer - Australian Plant Phenomics Facility (APPF), AUS<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Technology and Development Lead, APPF, Adelaide, AUS<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Project Manager Remote Sensing, Vito, BEL<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Postdoctoral Positions Post-Doctoral position: Close range sensing and Artificial intelligence for orchard phenotyping, INRAe, FR<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> 3 Postdoc positions in root phenomics, University of Arizona, USA<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Postdoc & research coordinator of crop phenotyping experiments in the framework of EMPHASIS, ETH Zurich, CHE<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Post-doc position, High-throughput plant phenotyping using UAV multi-sensor data, UW-Madison, USA<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Post-doc position, machine learning models with satellite remote sensing data, UW-Madison, USA<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Post-doc position for the development of smart sensors and imagers for plant phenotyping, Zhejiang University, PRC<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Post-doc position in Precision Agriculture Lab, Washington State University, USA<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> PhD Positions 10 fully-funded PhD positions in the MSCA Doctoral Network "ROOTED"<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> PhD Position at the intersection of Agriculture and Computer Sciences, ETH Zuerich, CHE<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> PhD - machine learning/deep learning, remote sensing, precision agriculture and UAVs, UW-Madison, USA<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [IPPN Website]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> IPPN Website<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [Twitter]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Twitter<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [LinkedIn]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> LinkedIn<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [Facebook]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Facebook<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> [YouTube]<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> YouTube<https://plant-phenotyping.us5.list-manage.com/track/click?u=a7608e25dded330…> Information on Data Privacy for this Newsletter ________________________________ While for most of the above mentioned social media platforms, privacy policies can be accessed on the respective channels themselves, we always want to make underlying policies transparent wherever this is not as obviously displayed: * This Newsletter is brought to you by IPPN Office using the 3rd party software MailChimp. 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[EXT] Ausschreibung wiss.MA DM
by Tania Baharyan-Pfeffer Oct. 19, 2023

Oct. 19, 2023

Sehr geehrte Damen und Herren, wir würden Sie ersuchen die mitgesendete Ausschreibung für einen wissenschaftlichen Mitarbeiter in einem BOKU-Projekt auf Ihrer Job-Börse für die APPN Community aufscheinen zu lassen. Bitte um kurze Info ab wann diese online sein kann. Herzlichen Dank für Ihre Unterstützung Mit besten Grüßen Tania Baharyan Tania Baharyan-Pfeffer Geschäftsstelle Department für Nutzpflanzenwissenschaften Department of Crop Sciences Universität für Bodenkultur Wien (BOKU) University of Natural Resources and Life Sciences, Vienna Konrad Lorenzstraße 24, A - 3430 Tulln Tel:+43 (1) 47654 - 95000,95005 Email: Tania.Baharyan-Pfeffer(a)boku.ac.at Website: boku.ac.at ______________________

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