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! Repair in plant growth chamber system, Tue 11th Nov !
by Helfenbein,Paula Nov. 11, 2025

Nov. 11, 2025

Dear all, unfortunately, our internal watering pump for the growth chambers in the 8th floor is leaking and needs to be replaced as soon as possible. At the moment all chambers are running as usual and temperature and humidity are the same as always and will also stay this way. But it is important to replace the broken pump as soon as possible, as it could cause further damage to the system otherwise. The repair is scheduled for next Tuesday, 11th of November at 8:30 am. During the repair, the watering pipes will be closed, therefore, there will be no watering (automatic or manually) and no humidity control in the chambers! We estimate that the repair will take a few hours, maybe less. Please contact me as soon as possible in case you have any humidity sensitive experiments running in the chambers at the moment. Please ensure that everyone in the lab is informed, that there will be no water accessible in the chamber during this time. I will inform you once the repair is done, and you can water your plants as usual. The automatic watering on Monday morning will happen as always. Thanks a lot for your understanding, best Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at/>

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New pest control alternative: Bacillus thuringiensis
by Helfenbein,Paula Oct. 6, 2025

Oct. 6, 2025

Dear all, from this week onwards we offer a new pest control alternative against black flies (Fungus gnat) at the MPL growth chambers in the 8th floor. You will find a new canister in the green cupboard in the sowing room filled with Bacillus thuringiensis - a bacteria solution that can be used as a natural pest control for insects due to its natural occurring toxicity (<i>Bacillus thuringiensis</i> (<i>Bt</i>) Fact Sheet<https://www.npic.orst.edu/factsheets/btgen.html>). The application is very similar to the ones of nematodes: mix 5 ml of Bacillus thuringiensis (Bt) solution with 1 litre of water in the green watering can and water your pots generously before sowing. Repeat the treatment every ~3 weeks. We will continue to offer nematodes as before in the fridge, the Bt solution is just an alternative to nematodes. It is necessary to apply either one of the pest control treatments, not both of them! If you have any questions, please feel free to reach out to us! Best regards, Paula [cid:cdaa855c-66f4-4921-bc6b-4e75a8f53f0a] P.S.: Please always put the canister and the watering can back into the green cupboard and close the door (as Bt has to be stored in dark), thank you :) [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at/>

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Change in booking system: labelled shelf units!
by Helfenbein,Paula Sept. 26, 2025

Sept. 26, 2025

Dear all, with 1st of October we plan a slight change in our booking system for all shared plant growth chambers: As you might have already noticed, the individual shelf units are now labelled with numbers. When booking your shelf unit in the booking system PPMS, please make sure you book the correct shelf unit number! This is true for all shared chambers, at the MPL chamber #19, #20 and #21 at the moment. All current bookings have been moved to their correct shelf unit number. Please make sure you always book the correct shelf unit number from now on and for the amount of time you will use it! This ensures that everyone has the same access to shared chambers and can plan their experiments accordingly. If you should ever have any problems with bookings, or want to terminate or change bookings, feel free to contact me. Thank you very much, Paula [cid:b3acdb0f-6c3a-4958-bd83-19c384c80b10] [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at/>

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Thrips in chamber #21
by Helfenbein,Paula Feb. 26, 2025

Feb. 26, 2025

Dear all, I hope you all had relaxing holidays and I wish you a happy new year! Unfortunately, we found thrips on one plant in the shared longday chamber #21. The tray was removed and so far, there are no traces that any of the other plants has been infected yet. Therefore, all other plants can stay in the chamber for now. Chamber #21 is now a quarantine chamber, so please follow these rules: * DO NOT move plants out of the chamber, NEVER bring plants to another chamber. All plants may remain in chamber #21. * Harvest and trash all plants in chamber #21 as soon as possible. * Only enter if absolutely necessary. * Leave all waste inside the chamber (take waste bins inside and leave them there). * Leave dirty trays inside the chamber. * DO NOT enter any other chamber on the same day once you entered chamber #21! We will precisely monitor all plants in the chamber and inform you how we will proceed. Please contact me directly if you have any plants that will not be harvested/trashed soon. If you have any questions, feel free to reach out to me. Thank you all for the cooperation and I am very sorry for the inconvenience, best Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at>

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APPN news: Goodbye + vacancy at the VBCF; 3rd AgroServ TNA call; BOKU phenotyping seminar.
by Jez,Jakub Nov. 22, 2024

Nov. 22, 2024

Dear APPN Friends! The time has come for a major change! Time, to start following and fulfilling my lifelong dreams about the oceans, marine ecosystems and scuba diving. I want to inform you that I terminated my working contract with the VBCF but will remain available until the end of this year. I do believe that my job at the VBCF and for the APPN is completed. PHENOPlant is fully operational and in service. The process of Austria joining the EU ESFRI EMPHASIS project is on a very good way and, currently, in the hands of the ministry. Thank you for all your valuable contributions which made APPN successful! It weas a great honor and pleasure to work with and learn from you. Every change creates opportunities: We are looking for my successor to lead my amazing team and collect all the scientific fruits of #PHENOPlant! https://www.viennabiocenter.org/fileadmin/user_upload/VBC/Career/Jobs/VBCF_… https://www.linkedin.com/posts/jezjakub_phenoplant-activity-726276475932478… Please like, share and apply! Further important plant phenotyping news: * The 3rd EU AgroServ call for transnational access (TNA) to EU agroecology research infrastructures is open: https://agroserv.eu/calls-and-applications/application-procedure Catalogue of Services/RIs: https://catalog.isia.cnrs.fr/catalog/2/services PHENOPlant: https://catalog.isia.cnrs.fr/catalog/2/services/240 Please note that PHENOPlant can be accessed also by Austrian universities/organizations/industry. The transnational approach doesn’t apply for ERICS. * EU ESFRI EMPHASIS ERIC Step 1 application was sent to the European Commission on October 31st. * BOKU seminar on “Shoot and root phenotyping – unexpected journey”, by Markéta Pernisová Ph.D. (PI, Faculty of Science, CEITEC). Thursday 28. November 2024 at 11.00 in the seminar room of Institute of Forest Ecology/BOKU. Seminar room: 02/10, Wilhelm-Exner-Haus, Peter-Jordan-Straße 82, 1190 Wien Host: Dr. Katarzyna Retzer I wish you all the best for your projects and future goals! Best regards, Jakub. P.S: Let’s stay in touch via LinkedIn: https://www.linkedin.com/in/jezjakub/

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Re: Measuring rounds
by Helfenbein,Paula Oct. 8, 2024

Oct. 8, 2024

Dear Gabi, perfect, thanks for letting me know! If you think that the number of plants that have not germinated at all could have changed since last week, could you go through them again and note down the empty pots again? If you feel like it should probably be roughly the same we can use your counting from last week! Thank you so much, Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> From: Hristova,Gabriela <gabriela.hristova(a)gmi.oeaw.ac.at> Date: Tuesday, October 8, 2024 at 11:24 AM To: Helfenbein,Paula <paula.helfenbein(a)vbcf.ac.at>, Voichek,Yoav <yoav.voichek(a)gmi.oeaw.ac.at> Cc: plants-user(a)lists.vbcf.ac.at <plants-user(a)lists.vbcf.ac.at> Subject: Re: Measuring rounds Dear Paula, We decided that we will stop with the Phenoplant measurements after the last measurement today. Some of the plants are getting quite big and their leaves are already touching other pots. Thank you for another successful round of phenotyping! Best, Gabi ________________________________ From: Helfenbein,Paula <paula.helfenbein(a)vbcf.ac.at> Sent: Tuesday, October 8, 2024 9:39:42 AM To: Voichek,Yoav <yoav.voichek(a)gmi.oeaw.ac.at>; Hristova,Gabriela <gabriela.hristova(a)gmi.oeaw.ac.at> Cc: plants-user(a)lists.vbcf.ac.at <plants-user(a)lists.vbcf.ac.at> Subject: Measuring rounds Dear Yoav, dear Gabi, the plants are growing fine and I will pick them up today again to measure them, which will then be the fourth measurement. Last time we stopped after the fourth measurement. Could you please have a look somewhen this week what you think about the plants now and if you want to continue with a measurement on Friday or not. If you should need help with anything let me know! Best Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at>

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Measuring rounds
by Helfenbein,Paula Oct. 8, 2024

Oct. 8, 2024

Dear Yoav, dear Gabi, the plants are growing fine and I will pick them up today again to measure them, which will then be the fourth measurement. Last time we stopped after the fourth measurement. Could you please have a look somewhen this week what you think about the plants now and if you want to continue with a measurement on Friday or not. If you should need help with anything let me know! Best Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at>

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RESOURCES - Austrian Plant Phenotyping Network
by Jez,Jakub Sept. 4, 2024

Sept. 4, 2024

Dear all, We just launched the first version of the APPN phenotyping resources list, highlighting Austrian plant phenotyping related research infrastructures, instruments, hand-held devices and (software) tools. The goal is to establish a one-stop-shop for plant phenotyping, allowing efficient expertise/RI search and to facilitate and streamline collaborations within and beyond the APPN. In case any instrument is missing and you want this instrument to be added, please fill the form attached and sent it back to us. Happy scrolling: https://appn.at/resources/ Best regards, Jakub. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project X: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub> [A picture containing text, indoor, wall Description automatically generated] FFG PHENOPlant<https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/>: Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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Norway spruce trees to give away
by Jez,Jakub Aug. 29, 2024

Aug. 29, 2024

Dear all, we had to exclude some plant samples from our running Norway spruce drought stress screen in PHENOPlant (see attachment). Time is flying; if you are looking for a small X-Mas tree for your flat, balcony or garden you can pick up a tree next Monday 22nd July at 11am in PHENOPlant (VBC6 building, 1st floor, 176). First-come-first-surf. In case of any questions please contact @Helfenbein,Paula<mailto:paula.helfenbein@vbcf.ac.at>. Merry X-Mas, yours PlantS.

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Open phenomics (top) management position: Interim Director-General EU ERIC EMPHASIS!
by Jez,Jakub July 5, 2024

July 5, 2024

Dear all, the European Research Infrastructure for Plant Phenotyping, EMPHASIS, is on the lookout for a visionary leader to join our team as the future EMPHASIS Interim Director-General! This pivotal role is a perfect blend of science and strategy, designed for an individual who can navigate and thrive in a multi-stakeholder ecosystem. Director-General will be at the forefront of EMPHASIS’ strategic development and expansion and will have a robust scientific background paired with exceptional managerial experience. If you are ready to impact plant phenotyping on a European and global scale, we want to hear from you! Apply via https://candidates.perrettlaver.com/vacancies/4259/interim_directorgeneral/. Please feel free to share. Have a great weekend, Jakub. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project Twitter: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub>

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