- plants-user - lists.vbcf.ac.at

Thrips in chamber #21
by Helfenbein,Paula Feb. 26, 2025

Feb. 26, 2025

Dear all, I hope you all had relaxing holidays and I wish you a happy new year! Unfortunately, we found thrips on one plant in the shared longday chamber #21. The tray was removed and so far, there are no traces that any of the other plants has been infected yet. Therefore, all other plants can stay in the chamber for now. Chamber #21 is now a quarantine chamber, so please follow these rules: * DO NOT move plants out of the chamber, NEVER bring plants to another chamber. All plants may remain in chamber #21. * Harvest and trash all plants in chamber #21 as soon as possible. * Only enter if absolutely necessary. * Leave all waste inside the chamber (take waste bins inside and leave them there). * Leave dirty trays inside the chamber. * DO NOT enter any other chamber on the same day once you entered chamber #21! We will precisely monitor all plants in the chamber and inform you how we will proceed. Please contact me directly if you have any plants that will not be harvested/trashed soon. If you have any questions, feel free to reach out to me. Thank you all for the cooperation and I am very sorry for the inconvenience, best Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at>

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APPN news: Goodbye + vacancy at the VBCF; 3rd AgroServ TNA call; BOKU phenotyping seminar.
by Jez,Jakub Nov. 22, 2024

Nov. 22, 2024

Dear APPN Friends! The time has come for a major change! Time, to start following and fulfilling my lifelong dreams about the oceans, marine ecosystems and scuba diving. I want to inform you that I terminated my working contract with the VBCF but will remain available until the end of this year. I do believe that my job at the VBCF and for the APPN is completed. PHENOPlant is fully operational and in service. The process of Austria joining the EU ESFRI EMPHASIS project is on a very good way and, currently, in the hands of the ministry. Thank you for all your valuable contributions which made APPN successful! It weas a great honor and pleasure to work with and learn from you. Every change creates opportunities: We are looking for my successor to lead my amazing team and collect all the scientific fruits of #PHENOPlant! https://www.viennabiocenter.org/fileadmin/user_upload/VBC/Career/Jobs/VBCF_… https://www.linkedin.com/posts/jezjakub_phenoplant-activity-726276475932478… Please like, share and apply! Further important plant phenotyping news: * The 3rd EU AgroServ call for transnational access (TNA) to EU agroecology research infrastructures is open: https://agroserv.eu/calls-and-applications/application-procedure Catalogue of Services/RIs: https://catalog.isia.cnrs.fr/catalog/2/services PHENOPlant: https://catalog.isia.cnrs.fr/catalog/2/services/240 Please note that PHENOPlant can be accessed also by Austrian universities/organizations/industry. The transnational approach doesn’t apply for ERICS. * EU ESFRI EMPHASIS ERIC Step 1 application was sent to the European Commission on October 31st. * BOKU seminar on “Shoot and root phenotyping – unexpected journey”, by Markéta Pernisová Ph.D. (PI, Faculty of Science, CEITEC). Thursday 28. November 2024 at 11.00 in the seminar room of Institute of Forest Ecology/BOKU. Seminar room: 02/10, Wilhelm-Exner-Haus, Peter-Jordan-Straße 82, 1190 Wien Host: Dr. Katarzyna Retzer I wish you all the best for your projects and future goals! Best regards, Jakub. P.S: Let’s stay in touch via LinkedIn: https://www.linkedin.com/in/jezjakub/

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Re: Measuring rounds
by Helfenbein,Paula Oct. 8, 2024

Oct. 8, 2024

Dear Gabi, perfect, thanks for letting me know! If you think that the number of plants that have not germinated at all could have changed since last week, could you go through them again and note down the empty pots again? If you feel like it should probably be roughly the same we can use your counting from last week! Thank you so much, Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> From: Hristova,Gabriela <gabriela.hristova(a)gmi.oeaw.ac.at> Date: Tuesday, October 8, 2024 at 11:24 AM To: Helfenbein,Paula <paula.helfenbein(a)vbcf.ac.at>, Voichek,Yoav <yoav.voichek(a)gmi.oeaw.ac.at> Cc: plants-user(a)lists.vbcf.ac.at <plants-user(a)lists.vbcf.ac.at> Subject: Re: Measuring rounds Dear Paula, We decided that we will stop with the Phenoplant measurements after the last measurement today. Some of the plants are getting quite big and their leaves are already touching other pots. Thank you for another successful round of phenotyping! Best, Gabi ________________________________ From: Helfenbein,Paula <paula.helfenbein(a)vbcf.ac.at> Sent: Tuesday, October 8, 2024 9:39:42 AM To: Voichek,Yoav <yoav.voichek(a)gmi.oeaw.ac.at>; Hristova,Gabriela <gabriela.hristova(a)gmi.oeaw.ac.at> Cc: plants-user(a)lists.vbcf.ac.at <plants-user(a)lists.vbcf.ac.at> Subject: Measuring rounds Dear Yoav, dear Gabi, the plants are growing fine and I will pick them up today again to measure them, which will then be the fourth measurement. Last time we stopped after the fourth measurement. Could you please have a look somewhen this week what you think about the plants now and if you want to continue with a measurement on Friday or not. If you should need help with anything let me know! Best Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at>

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Measuring rounds
by Helfenbein,Paula Oct. 8, 2024

Oct. 8, 2024

Dear Yoav, dear Gabi, the plants are growing fine and I will pick them up today again to measure them, which will then be the fourth measurement. Last time we stopped after the fourth measurement. Could you please have a look somewhen this week what you think about the plants now and if you want to continue with a measurement on Friday or not. If you should need help with anything let me know! Best Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at>

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RESOURCES - Austrian Plant Phenotyping Network
by Jez,Jakub Sept. 4, 2024

Sept. 4, 2024

Dear all, We just launched the first version of the APPN phenotyping resources list, highlighting Austrian plant phenotyping related research infrastructures, instruments, hand-held devices and (software) tools. The goal is to establish a one-stop-shop for plant phenotyping, allowing efficient expertise/RI search and to facilitate and streamline collaborations within and beyond the APPN. In case any instrument is missing and you want this instrument to be added, please fill the form attached and sent it back to us. Happy scrolling: https://appn.at/resources/ Best regards, Jakub. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project X: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub> [A picture containing text, indoor, wall Description automatically generated] FFG PHENOPlant<https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/>: Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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Norway spruce trees to give away
by Jez,Jakub Aug. 29, 2024

Aug. 29, 2024

Dear all, we had to exclude some plant samples from our running Norway spruce drought stress screen in PHENOPlant (see attachment). Time is flying; if you are looking for a small X-Mas tree for your flat, balcony or garden you can pick up a tree next Monday 22nd July at 11am in PHENOPlant (VBC6 building, 1st floor, 176). First-come-first-surf. In case of any questions please contact @Helfenbein,Paula<mailto:paula.helfenbein@vbcf.ac.at>. Merry X-Mas, yours PlantS.

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Open phenomics (top) management position: Interim Director-General EU ERIC EMPHASIS!
by Jez,Jakub July 5, 2024

July 5, 2024

Dear all, the European Research Infrastructure for Plant Phenotyping, EMPHASIS, is on the lookout for a visionary leader to join our team as the future EMPHASIS Interim Director-General! This pivotal role is a perfect blend of science and strategy, designed for an individual who can navigate and thrive in a multi-stakeholder ecosystem. Director-General will be at the forefront of EMPHASIS’ strategic development and expansion and will have a robust scientific background paired with exceptional managerial experience. If you are ready to impact plant phenotyping on a European and global scale, we want to hear from you! Apply via https://candidates.perrettlaver.com/vacancies/4259/interim_directorgeneral/. Please feel free to share. Have a great weekend, Jakub. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project Twitter: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub>

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Free access to PHENOPlant: 2nd AgroServ call will open soon + webinar announcement
by Jez,Jakub June 21, 2024

June 21, 2024

Dear all, There is another chance to get funded access to PHENOPlant (and many, many more European AgroEcology relevant RIs) via the 2nd AgroServ TNA call! The application period for the second Call for projects by AgroServ will officially open on June 27th, with a deadline to submit proposals set for September 30th at 12:00 PM (CEST). https://agroserv.eu/ 2nd call webinar and QA, 4th July: https://agroserv.eu/blog/2nd-call-webinar Apply here: https://agroserv.eu/calls-and-resources Catalogue of services: https://isia.cnrs.fr/catalog/service/list/agroserv PHENOPlant in the catalogue of services: https://isia.cnrs.fr/network/service/read/240 Feel free to contact me in case of any questions. Best, Jakub. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project Twitter: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub> FFG PHENOPlant<https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/>: Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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INVITATION: 4th Austrian Plant Phenotyping Network Meeting - 23rd May, 2024, VBC.
by Jez,Jakub May 8, 2024

May 8, 2024

Dear colleagues and friends, It is our pleasure to invite you to the 4th Austrian Plant Phenotyping Network (APPN) Meeting, which will take place May 23rd, 2024, at the Vienna BioCenter, IMP lecture hall. Free Registration and abstract submission are open: https://appn.at/events/4thappn/ As the last years, the meeting will be free to attend, thanks to the support of our company partners. This year we aim for a national focus on recently established plat phenotyping infrastructures, instrumentation, and methodologies. Covering topics in basic- and applied plant research from Arabidopsis, via crop plants up to trees. Roots and shoots. Lab to field. Success stories and setbacks. We are looking forward to receiving your abstracts for talks and posters! Confirmed speakers: Carlos Trujillo-Moya & Ahmad Muhammad (BFW) – “High-throughput phenotyping integrated with metabolomics and transcriptomics reveals a new fine-scale method to study drought stress in Norway spruce seedlings“ Claudia Jonak (AIT) – H2020 project: “Multilayered phenotyping to uncover resilience to temperature and water stress in camelina sativa” Markus Puschenreiter (BOKU/MUL) – “Beneficial effects of carbon from methane plasmalysis on soil conditions and plant growth” Markus Teige (UniVie) – H2020 project: “ADAPT – Accelerated development of multiple – stress tolerant potato” Verena Ibl (UniVie) – “A bench-top Dark-Root device built with LEGO® bricks enables a non-invasive plant root development analysis in soil conditions mirroring nature“ Dominik Grosskinsky (AIT) – „Sensor-based and physiological phenotyping approaches to support crop improvement” David Major (VRVis) – “Satellite image super-resolution for enhanced agriculture monitoring” Please help to share this invitation in your organizations and networks! The flyer is attached to this mail. Looking forward to meet you in person. Best regards, Jakub Jez, on behalf of the organizing committee. P.S.: Yes, there will be food, wine and music. [VBC Logo] Jakub Jez Head, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 8084 77090<tel:+43%20664%208084%2077090> jakub.jez(a)vbcf.ac.at<mailto:jakub.jez@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at> Chair, Austrian Plant Phenotyping Network (APPN<https://www.appn.at/>) and Support Group Member of ESFRI EMPHASIS<https://emphasis.plant-phenotyping.eu/> project Twitter: @VBCF_PlantS<https://twitter.com/VBCF_PlantS> LinkedIn: www.linkedin.com/in/jezjakub<http://www.linkedin.com/in/jezjakub> [A picture containing text, indoor, wall Description automatically generated] FFG PHENOPlant<https://www.viennabiocenter.org/vbcf/plant-sciences/phenoplant/>: Austrias 1st multi-sensor, high-throughput plant phenotyping infrastructure.

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Change in rules for virus experiments
by Helfenbein,Paula Feb. 1, 2024

Feb. 1, 2024

Dear all, I would like to inform you that there are some changes regarding the rules for virus experiments. We have closed the virus chamber #23 at the MPL because the virus experiments have largely come to an end in recent months. Chamber #23 is now constantly booked for biotic stress experiments. If you wish to do any experiments with viruses, please approach us via plants(a)vbcf.ac.at<mailto:plants@vbcf.ac.at> and we will arrange space for you. If you have any questions, please always feel free to reach out to us. Best regards, Paula [VBC Logo] Paula Helfenbein Core Technician, Plant Sciences Facility T +43 1 7962324 7090<tel:+43179623247090> M +43 664 80847 7980 paula.helfenbein(a)vbcf.ac.at<mailto:paula.helfenbein@vbcf.ac.at> Vienna BioCenter Core Facilities GmbH Dr. Bohr-Gasse 3 1030 Vienna Austria www.vbcf.ac.at<https://www.vbcf.ac.at>

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